Tidy Common Workflow Language Tools and Workflows

The Common Workflow Language < https://www.commonwl.org/> is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or 'YAML' and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their 'Shiny' applications, and export them as HTML files or static images.


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Reference manual

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install.packages("tidycwl")

1.0.3 by Nan Xiao, 7 days ago


https://sbg.github.io/tidycwl/, https://github.com/sbg/tidycwl


Report a bug at https://github.com/sbg/tidycwl/issues


Browse source code at https://github.com/cran/tidycwl


Authors: Nan Xiao [aut, cre] , Soner Koc [aut] , Dennis Dean [aut] , Seven Bridges Genomics [cph, fnd]


Documentation:   PDF Manual  


AGPL-3 license


Imports jsonlite, yaml, dplyr, magrittr, visNetwork, htmlwidgets, webshot

Suggests knitr, rmarkdown, shiny

System requirements: PhantomJS (https://phantomjs.org).


See at CRAN