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Gene Cluster Visualizations
Provides tools for plotting gene clusters and transcripts by
importing data from GenBank, FASTA, and GFF files. It performs BLASTP and
MUMmer alignments [Altschul et al. (1990)
'shiny' Cron Expression Input Widget
A widget for 'shiny' apps to handle schedule expression input, using the 'cron-expression-input' JavaScript component. Note that this does not edit the 'crontab' file, it is just an input element for the schedules. See < https://github.com/DatalabFabriek/shinycroneditor/blob/main/inst/examples/shiny-app.R> for an example implementation.
Context-Aware AI Assistant for 'RStudio'
A context-aware AI assistant for 'RStudio' that works directly in the source editor without switching context or opening a separate chat window. Reads the cursor position and selection to automatically choose the right action - generate, complete, continue, edit, or comment. Supports configuration of multiple large language model providers and can be invoked via the keyboard shortcut or Addins menu.
Predictive Power Score
The Predictive Power Score (PPS) is an asymmetric, data-type-agnostic score that can detect linear or non-linear relationships between two variables. The score ranges from 0 (no predictive power) to 1 (perfect predictive power). PPS can be useful for data exploration purposes, in the same way correlation analysis is. For more information on PPS, see < https://github.com/paulvanderlaken/ppsr>.
Download and Tidy Data from the Australian Prudential Regulation Authority
Download the latest data from the Australian Prudential Regulation Authority < https://www.apra.gov.au/> and import it into R as a tidy data frame.
Manipulation of Microsoft Word and PowerPoint Documents
Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft PowerPoint' documents from R. The package focuses on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. The package does not require any installation of Microsoft products to be able to write Microsoft files.
Rasterize Layers for 'ggplot2'
Rasterize only specific layers of a 'ggplot2' plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.
Datasets for Spatial Analysis
Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis. It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep'). Unlike other spatial data packages such as 'rnaturalearth' and 'maps', it also contains data stored in a range of file formats including GeoJSON and GeoPackage, but from version 2.3.4, no longer ESRI Shapefile - use GeoPackage instead. Some of the datasets are designed to illustrate specific analysis techniques. cycle_hire() and cycle_hire_osm(), for example, is designed to illustrate point pattern analysis techniques.
Targeted Maximum Likelihood Estimation for Two-Stage Study Design
An inverse probability of censoring weighted (IPCW) targeted maximum likelihood estimator (TMLE) for evaluating a marginal point treatment effect from data where some variables were collected on only a subset of participants using a two-stage design (or marginal mean outcome for a single arm study). A TMLE for conditional parameters defined by a marginal structural model (MSM) is also available.
Curved Text in 'ggplot2'
A 'ggplot2' extension that allows text to follow curved paths. Curved text makes it easier to directly label paths or neatly annotate in polar co-ordinates.