Retinal Reconstruction Program

Reconstructs retinae by morphing a flat surface with cuts (a dissected flat-mount retina) onto a curvilinear surface (the standard retinal shape). It can estimate the position of a point on the intact adult retina to within 8 degrees of arc (3.6% of nasotemporal axis). The coordinates in reconstructed retinae can be transformed to visuotopic coordinates.


News

CHANGES IN VERSION 0.5.12 - Released 2017/08/08

NEW FEATURES

  • AnnotatedOutline() and Outline() are exported to allow use with external packages (https://github.com/davidcsterratt/retistruct/issues/17) Thanks to Brian Cohn for the report and the patch.

BUG FIXES

  • Documentation has been spell checked using devtools::spell_check() (https://github.com/davidcsterratt/retistruct/issues/19)

CHANGES IN VERSION 0.5.11 - Released 2017/07/15

RELEASE NOTES

  • R 3.4.0 is required to run the graphical user interface (GUI), because there is no version of the RGtk2 package that works with earlier versions of R available on CRAN.

  • There is a bug in version 1.0.5 of gWidgets2RGtk that prevents the GUI working. If you encounter this problem, work around it by typing

    install.packages("gWidgets2RGtk2")

    in the R console and then running retistruct() again. (You may need to quit R befor being able to run this command.) More information at: https://github.com/davidcsterratt/retistruct/issues/13

NEW FEATURES

  • The CSV input format can now take a file of counts (or "grouped") data (https://github.com/davidcsterratt/retistruct/issues/7) Thanks to Nicolas Nagoo for the report.

BUG FIXES

  • 3D (RGL) plot now appears after reconstruction (https://github.com/davidcsterratt/retistruct/issues/5) Thanks to Nicolas Nagoo for the report.

  • gWidgets2RGtk not found and package.dependencies() is deprecated (https://github.com/davidcsterratt/retistruct/issues/12)

  • gWidgets2::gdroplist is deprecated (https://github.com/davidcsterratt/retistruct/issues/10)

  • Test failed buiding on Windows i386 (https://github.com/davidcsterratt/retistruct/issues/14)

  • Issue with adding tears in retistruct (https://github.com/davidcsterratt/retistruct/issues/11) Thanks to https://github.com/sagewiltse for the report.

CODE IMPROVEMENTS

  • gWidgets2 is now used instead of gWidgets. Thanks to John Verzani for fixing bugs in gWidgets2.

CHANGES IN VERSION 0.5.10 - Released 2015/02/16

CODE IMPROVEMENTS

  • retistruct:::bary.to.sphere.cart() and retistruct:::sphere.cart.to.sphere.spherical() are exported. (https://github.com/davidcsterratt/retistruct/issues/2) Thanks to Brian Cohn for the request.

BUG FIXES

  • The message produced by delaunayn() in geometry package 0.3-5 has been suppressed. (https://github.com/davidcsterratt/retistruct/issues/3) Thanks to Brian Cohn for the report.

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("retistruct")

0.5.12 by David C. Sterratt, 2 years ago


http://davidcsterratt.github.io/retistruct/


Report a bug at https://github.com/davidcsterratt/retistruct/issues


Browse source code at https://github.com/cran/retistruct


Authors: David C. Sterratt [aut, cre, cph] , Daniel Lyngholm [aut, cph]


Documentation:   PDF Manual  


CC BY-NC-SA 4.0 license


Imports foreign, RImageJROI, png, ttutils, sp, geometry, RTriangle, rgl, R.matlab

Suggests testthat, gWidgets2RGtk2, gWidgets2, cairoDevice, RGtk2


See at CRAN