Construct Consensus Genetic Maps and Estimate Recombination Rates

Construct consensus genetic maps with LPmerge, see Endelman and Plomion (2014) and model the relationship between physical distance and genetic distance using thin-plate regression splines, see Wood (2003) . Perform quality control on input data and visualise intermediate steps.


Reference manual

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0.1.2 by Dennis van Muijen, a year ago

Browse source code at

Authors: Dennis van Muijen , Ram Kumar Basnet , Nathalie J. Dek

Documentation:   PDF Manual  

GPL-3 license

Imports dplyr, ggplot2, mgcv, doParallel, parallel, foreach, stringi, plotly, visNetwork, LPmerge, lazyeval, tidyr

Depends on igraph

Suggests knitr, rmarkdown

See at CRAN