File Handlers for Genomic Data Analysis

A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.


Reference manual

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install.packages("GenomicTools.fileHandler") by Daniel Fischer, a year ago

Browse source code at

Authors: Daniel Fischer

Documentation:   PDF Manual  

GPL (>= 2) license

Imports snpStats

Depends on data.table

Suggests knitr, rmarkdown

Imported by hoardeR.

Depended on by GenomicTools.

See at CRAN