Biodiversity Data Checks

Supplies a Shiny app and a set of functions to perform and managing data checks for biodiversity data.


Travis CI Build Status AppVeyor Build Status Managing all data checks

Install bdchecks with:

devtools::install_github("bd-R/bdchecks")

Load with:

library(bdchecks)

Run shiny app with:

runbdchecks()

Performing data checks

Perform data checks (not exported yet):

resultDC <- bdchecks::performDataCheck(dataBats)

Check what data checks were performed (default show method):

resultDC

Export data after data checks (file or R object) (not exported yet):

bdchecks::exportDataCheck(resultDC)

Quick glance at data check result (% of records that passed) (not exported yet):

# Nice summary
summary_DC(resultDC)

Dealing with data checks

Load data checks (DC) into R using getDC() function. Needs local yaml file:

DC <- getDC(pathToYAML)

Export DCs from a given yaml file to rda and roxygen2 comments:

bdchecks:::exportDC(pathToYAML)

News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("bdchecks")

0.1.7 by Povilas Gibas, 3 months ago


https://github.com/bd-R/bdchecks


Report a bug at https://github.com/bd-R/bdchecks/issues


Browse source code at https://github.com/cran/bdchecks


Authors: Povilas Gibas [aut, cre] , Tomer Gueta [aut] , Vijay Barve [aut] , Thiloshon Nagarajah [aut] , Yohay Carmel [aut]


Documentation:   PDF Manual  


GPL-3 | file LICENSE license


Imports bdDwC, DT, data.table, finch, methods, knitr, rgbif, shiny, shinyBS, shinydashboard, shinyjs, spocc, yaml

Suggests testthat, covr


Imported by bdclean.


See at CRAN