Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework

Use Monte-Carlo and K-fold cross-validation coupled with machine- learning classification algorithms to perform population assignment, with functionalities of evaluating discriminatory power of independent training samples, identifying informative loci, reducing data dimensionality for genomic data, integrating genetic and non-genetic data, and visualizing results.


Reference manual

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install.packages("assignPOP")

1.3.1 by Kuan-Yu (Alex) Chen, a year ago


https://github.com/alexkychen/assignPOP


Browse source code at https://github.com/cran/assignPOP


Authors: Kuan-Yu (Alex) Chen [aut, cre] , Elizabeth A. Marschall [aut] , Michael G. Sovic [aut] , Anthony C. Fries [aut] , H. Lisle Gibbs [aut] , Stuart A. Ludsin [aut]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports caret, doParallel, e1071, foreach, ggplot2, MASS, parallel, randomForest, reshape2, stringr, tree, rlang

Suggests gtable, iterators, klaR, stringi, knitr, rmarkdown, testthat


See at CRAN