Rarefaction Methods

Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) ; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W., … Chiarucci, A. (2016) ; Bacaro, G., Rocchini, D., Ghisla, A., Marcantonio, M., Neteler, M., & Chiarucci, A. (2012) ).


Reference manual

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1.1 by Elisa Thouverai, 7 months ago

Browse source code at https://github.com/cran/Rarefy

Authors: Elisa Thouverai [aut, cre] , Sandrine Pavoine [aut] , Enrico Tordoni [aut] , Duccio Rocchini [aut] , Carlo Ricotta [aut] , Alessandro Chiarucci [aut] , Giovanni Bacaro [aut]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports ade4, adiv, ape, dplyr, geiger, methods, stats, vegan

Suggests kableExtra, knitr, phyloregion, picante, phytools, raster, rmarkdown

See at CRAN