Consensus Pathway Analysis

Provides a set of functions to perform pathway analysis and meta-analysis from multiple gene expression datasets, as well as visualization of the results. This package wraps functionality from the following packages: Ritchie et al. (2015) , Love et al. (2014) , Robinson et al. (2010) , Korotkevich et al. (2016) , Efron et al. (2015) < https://CRAN.R-project.org/package=GSA>, and Gu et al. (2012) < https://CRAN.R-project.org/package=CePa>.


Reference manual

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install.packages("RCPA")

0.2.9 by Ha Nguyen, 3 months ago


Report a bug at https://github.com/tinnlab/RCPA/issues


Browse source code at https://github.com/cran/RCPA


Authors: Ha Nguyen [aut, cre] , Phi Bya [aut] , Zeynab Maghsoudi [aut] , Tin Nguyen [fnd]


Documentation:   PDF Manual  


GPL-3 license


Imports AnnotationDbi, SummarizedExperiment, BiocManager, Biobase, DESeq2, GEOquery, edgeR, limma, stringr, ggnewscale, ggrepel, graph, httr, rlang, ggpattern, scales, RobustRankAggreg, methods, jsonlite, IRdisplay

Depends on tidyr, dplyr, ggplot2, utils, stats

Suggests knitr, rmarkdown, markdown, testthat, ROntoTools, fgsea, GSA, CePa, meta, png, ggvenn, RCurl, XML, S4Vectors, hgu133plus2.db, org.Hs.eg.db, oligo


See at CRAN