Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
HTSSIP is an R package for analyzing high throughput sequence data from nucleotide stable isotope probing (DNA- & RNA-SIP) experiments.
Identifying community-level isotope incorporatation
Identifying isotope incorporators
All documentation can be found on CRAN.
A good place to start is the HTSSIP introduction vignette.
The manuscript describing HTSSIP is:
References in the HTSSIP introduction vignette.
To get the current released version from CRAN:
To get the current development version from github: