Differential Gene Expression (DGE) Analysis Utility Toolkit

Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) ). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.


Reference manual

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1.0.4 by Connie Brett, 3 months ago

Browse source code at https://github.com/cran/DGEobj.utils

Authors: John Thompson [aut] , Connie Brett [aut, cre] , Isaac Neuhaus [aut] , Ryan Thompson [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports assertthat, DGEobj, dplyr, stats, stringr, edgeR, limma, qvalue, sva

Suggests canvasXpress, conflicted, glue, ggplot2, IHW, knitr, RNASeqPower, rmarkdown, statmod, testthat, biomaRt, zFPKM

See at CRAN