Differential Gene Expression (DGE) Analysis Utility Toolkit

Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) ). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("DGEobj.utils")

1.0.3 by Connie Brett, 20 days ago


Browse source code at https://github.com/cran/DGEobj.utils


Authors: John Thompson [aut] , Connie Brett [aut, cre] , Isaac Neuhaus [aut] , Ryan Thompson [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports assertthat, DGEobj, dplyr, statmod, stats, stringr, tidyr, edgeR, IHW, limma, qvalue, RNASeqPower, sva, zFPKM

Suggests canvasXpress, conflicted, glue, ggplot2, knitr, rmarkdown, testthat, biomaRt


See at CRAN