Biological Graph Signal Processing for Spatial Data Analysis

Implementation of Graph Signal Processing (GSP) methods including Spectral Graph Wavelet Transform (SGWT) for analyzing spatial patterns in biological data. Based on Hammond, Vandergheynst, and Gribonval (2011) . Provides tools for multi-scale analysis of biology spatial signals, including forward and inverse transforms, energy analysis, and visualization functions tailored for biological applications. Biological application example is on Stephanie, Yao, Yuzhou (2024) .


Reference manual

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install.packages("BioGSP")

1.0.1 by Yuzhou Chang, 21 days ago


https://github.com/BMEngineeR/BioGSP


Report a bug at https://github.com/BMEngineeR/BioGSP/issues


Browse source code at https://github.com/cran/BioGSP


Authors: Yuzhou Chang [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports Matrix, igraph, RANN, RSpectra, ggplot2, patchwork, gridExtra, viridis, methods, dplyr

Suggests knitr, rmarkdown, ggrepel


See at CRAN