Packages by Kevin R. Coombes

BimodalIndex — 1.1.9

The Bimodality Index

ClassComparison — 3.3.2

Classes and Methods for "Class Comparison" Problems on Microarrays

ClassDiscovery — 3.4.5

Classes and Methods for "Class Discovery" with Microarrays or Proteomics

CloneSeeker — 1.0.11

Seeking and Finding Clones in Copy Number and Sequencing Data

CrossValidate — 2.3.4

Classes and Methods for Cross Validation of "Class Prediction" Algorithms

GenAlgo — 2.2.0

Classes and Methods to Use Genetic Algorithms for Feature Selection

Mercator — 1.1.5

Clustering and Visualizing Distance Matrices

Modeler — 3.4.5

Classes and Methods for Training and Using Binary Prediction Models

NameNeedle — 1.2.7

Using Needleman-Wunsch to Match Sample Names

NewmanOmics — 1.0.11

Extending the Newman Studentized Range Statistic to Transcriptomics

PCDimension — 1.1.13

Finding the Number of Significant Principal Components

Polychrome — 1.5.1

Qualitative Palettes with Many Colors

PreProcess — 3.1.7

Basic Functions for Pre-Processing Microarrays

RCytoGPS — 1.2.7

Using Cytogenetics Data in R

RPointCloud — 0.8.0

Visualizing Topological Loops and Voids

SIBERG — 2.0.3

Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

SillyPutty — 0.4.1

Silly Putty Clustering

TailRank — 3.2.2

The Tail-Rank Statistic

Thresher — 1.1.4

Threshing and Reaping for Principal Components

Umpire — 2.0.10

Simulating Realistic Gene Expression and Clinical Data

WayFindR — 0.1.2

Computing Graph Structures on WikiPathways

integIRTy — 1.0.7

Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory

oompaBase — 3.2.9

Class Unions, Matrix Operations, and Color Schemes for OOMPA

oompaData — 3.1.4

Data to Illustrate OOMPA Algorithms

plasma — 1.1.3

Partial LeAst Squares for Multiomic Analysis