Class Unions, Matrix Operations, and Color Schemes for OOMPA

Provides the class unions that must be preloaded in order for the basic tools in the OOMPA (Object-Oriented Microarray and Proteomics Analysis) project to be defined and loaded. It also includes vectorized operations for row-by-row means, variances, and t-tests. Finally, it provides new color schemes. Details on the packages in the OOMPA project can be found at < http://oompa.r-forge.r-project.org/>.


News

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	CHANGES IN R VERSION 3.2.6

UPDATES

o	Removed use of deprecated elements from S4-classes.

	CHANGES IN R VERSION 3.2.5

NEW FEATURES

o	Added the 'cyanyellow' color scheme. This scheme is designed
to provide a divergent palette with distinguishable colors at both
ends of the scale even for indiviudals whose vision has color
deficits (that is, they lack cone receptors for one of the primary
colors).


	CHANGES IN R VERSION 3.2.0

NEW FEATURES

o	Added the 'grayscale' color scheme.

BUG FIXES

o	Made compatible with new R check steps that verify DESCRIPTION
    and NAMESPACE dependencies.

	CHANGES IN R VERSION 3.1.0

ADMINSTRATION

o	Changed the LICENSE from Artistic 2.0 to Apache 2.0.

	CHANGES IN R VERSION 3.0.2

BUG FIXES

o	Made compatible with new R check steps that verify DESCRIPTION
    and NAMESPACE dependencies.

	CHANGES IN R VERSION 3.0.1

NEW FEATURES

o	Moved generic functions from PreProcess to oompaBase,
	mainly to simplify the overall dependence structure 
by taking unused PreProcess code out of the main line.

o   Moved ColorCoding and ColorCodedPair classes from this package
	into the oompaBase package.

BREAKING CHANGES

o	Also moved semantic color names from PreProcess to oompaBase,
    and restructured it to add fewer entries into the namespace.
    Instead of using 'COLOR.EXPECTED', you must now refer to
    'oompaColors$EXPECTED'.

	CHANGES IN R VERSION 3.0.0

NEW FEATURES

o	Released in conjunction with new version of R.

	CHANGES IN R VERSION 2.15.0

NEW FEATURES

o	Released in conjunction with new version of R.

	CHANGES IN R VERSION 2.14.0

NEW FEATURES

o	Released in conjunction with new version of R.

	CHANGES IN R VERSION 2.13.0

NEW FEATURES

o	Released in conjunction with new version of R.

	CHANGES IN R VERSION 2.12.0

BUG FIXES

o	Fixed an error in matrixpairedT that usually resulted in
    getting the pairing mixed up. Added a formal test suite to
    make sure the same bug does not recur.

	CHANGES IN R VERSION 2.10.1

NEW FEATURES

o	Moved (duplicated) matrix mean and variance code from the
    ClassComparison and TailRank packages into this package.

o	Moved the color functions (e..g, redgreen, jetColors) from
	the ClassDiscovery pacakge into this package, in order to
	simplify dependencies.


	CHANGES IN R VERSION 2.10.0

NEW FEATURES

o	Verified compatibility with R 2.10.0


	CHANGES IN R VERSION 2.9.0

NEW FEATURES

o	Added support for namespaces

Reference manual

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install.packages("oompaBase")

3.2.8 by Kevin R. Coombes, 15 days ago


http://oompa.r-forge.r-project.org/


Browse source code at https://github.com/cran/oompaBase


Authors: Kevin R. Coombes


Documentation:   PDF Manual  


Apache License (== 2.0) license


Imports methods, graphics, grDevices, stats, cluster


Imported by BimodalIndex, CrossValidate, GenAlgo, PCDimension, Thresher, paletteer.

Depended on by ClassComparison, ClassDiscovery, Modeler, PreProcess, TailRank.


See at CRAN