Tidy Methods for Bayesian Treatment Effect Models

Functions for extracting tidy data from Bayesian treatment effect models, in particular BART, but extensions are possible. Functionality includes extracting tidy posterior summaries as in 'tidybayes' < https://github.com/mjskay/tidybayes>, estimating (average) treatment effects, common support calculations, and plotting useful summaries of these.

String Distance Calculation with Tidy Data Principles

Calculation of string distance following the tidy data principles. Built on top of the 'stringdist' package.

Expand Tidy Output for Categorical Parameter Estimates

Create additional rows and columns on broom::tidy() output to allow for easier control on categorical parameter estimates.

Tidy Model Visualisation for Generalised Additive Models

Provides functions for visualising generalised additive models and getting predicted values using tidy tools from the 'tidyverse' packages.

Explore 'Wikidata' Through Tidy Data Frames

Query 'Wikidata' API < https://www.wikidata.org/wiki/Wikidata:Main_Page> with ease, get tidy data frames in response, and cache data in a local database.

Analyze Lines of R Code the Tidy Way

Analyze lines of R code using tidy principles. This allows you to input lines of R code and output a data frame with one row per function included. Additionally, it facilitates code classification via included lexicons.

Converts 'MultiQC' Reports into Tidy Data Frames

Provides the means to convert 'multiqc_data.json' files, produced by the wonderful 'MultiQC' tool, into tidy data frames for downstream analysis in R. This analysis might involve cohort analysis, quality control visualisation, change-point detection, statistical process control, clustering, or any other type of quality analysis.

Tidy Verbs for Dealing with Genomic Data Frames

Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.

A Tidy Approach to 'NetCDF' Data Exploration and Extraction

Tidy tools for 'NetCDF' data sources. Explore the contents of a 'NetCDF' source (file or URL) presented as variables organized by grid with a database-like interface. The hyper_filter() interactive function translates the filter value or index expressions to array-slicing form. No data is read until explicitly requested, as a data frame or list of arrays via hyper_tibble() or hyper_array().

Tidy Common Workflow Language Tools and Workflows

The Common Workflow Language < https://www.commonwl.org/> is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or 'YAML' and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their 'Shiny' applications, and export them as HTML files or static images.