Optimizing Acoustic Signal Detection

Facilitates the automatic detection of acoustic signals, providing functions to diagnose and optimize the performance of detection routines. Detections from other software can also be explored and optimized. This package has been peer-reviewed by rOpenSci. Araya-Salas et al. (2022) .

Agent-Based Bird Point Count Simulator

A highly scientific and utterly addictive bird point count simulator to test statistical assumptions, aid survey design, and have fun while doing it (Solymos 2024 ). The simulations follow time-removal and distance sampling models based on Matsuoka et al. (2012) , Solymos et al. (2013) , and Solymos et al. (2018) , and sound attenuation experiments by Yip et al. (2017) .

Tools for Cleaning Rectangular Data

A dependency-free collection of simple functions for cleaning rectangular data. This package allows to detect, count and replace values or discard rows/columns using a predicate function. In addition, it provides tools to check conditions and return informative error messages.

Detection of Univariate Outliers

Well known outlier detection techniques in the univariate case. Methods to deal with skewed distribution are included too. The Hidiroglou-Berthelot (1986) method to search for outliers in ratios of historical data is implemented as well. When available, survey weights can be used in outliers detection.

Hyperlink Automatic Detection

Automatic detection of hyperlinks for packages and calls in the text of 'rmarkdown' or 'quarto' documents.

Spatially Explicit Capture-Recapture

Functions to estimate the density and size of a spatially distributed animal population sampled with an array of passive detectors, such as traps, or by searching polygons or transects. Models incorporating distance-dependent detection are fitted by maximizing the likelihood. Tools are included for data manipulation and model selection.

PharmacoVigilance Signal Detection

A collection of several pharmacovigilance signal detection methods extended to the multiple comparison setting.

Backward Procedure for Change-Point Detection

Implements a backward procedure for single and multiple change point detection proposed by Shin et al. . The backward approach is particularly useful to detect short and sparse signals which is common in copy number variation (CNV) detection.

R Interface to X-13-ARIMA-SEATS

Easy-to-use interface to X-13-ARIMA-SEATS, the seasonal adjustment software by the US Census Bureau. It offers full access to almost all options and outputs of X-13, including X-11 and SEATS, automatic ARIMA model search, outlier detection and support for user defined holiday variables, such as Chinese New Year or Indian Diwali. A graphical user interface can be used through the 'seasonalview' package. Uses the X-13-binaries from the 'x13binary' package.

QTL Hotspot Detection

This function produces both the numerical and graphical summaries of the QTL hotspot detection in the genomes that are available on the worldwide web including the flanking markers of QTLs.