Neural Networks using the Stuttgart Neural Network Simulator (SNNS)

The Stuttgart Neural Network Simulator (SNNS) is a library containing many standard implementations of neural networks. This package wraps the SNNS functionality to make it available from within R. Using the 'RSNNS' low-level interface, all of the algorithmic functionality and flexibility of SNNS can be accessed. Furthermore, the package contains a convenient high-level interface, so that the most common neural network topologies and learning algorithms integrate seamlessly into R.

Dynamic Extensions for Network Objects

Simple interface routines to facilitate the handling of network objects with complex intertemporal data. This is a part of the "statnet" suite of packages for network analysis.

Geometries to Plot Networks with 'ggplot2'

Geometries to plot network objects with 'ggplot2'.

Visualising Bipartite Networks and Calculating Some (Ecological) Indices

Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.

A Collection of Network Data Sets for the 'igraph' Package

A small collection of various network data sets, to use with the 'igraph' package: the Enron email network, various food webs, interactions in the immunoglobulin protein, the karate club network, Koenigsberg's bridges, visuotactile brain areas of the macaque monkey, UK faculty friendship network, domestic US flights network, etc.

Bayesian Networks

Probability propagation in Bayesian networks, also known as graphical independence networks. Documentation of the package is provided in vignettes included in the package and in the paper by Højsgaard (2012, ). See 'citation("gRain")' for details.

Time Series Forecasting with Neural Networks

Automatic time series modelling with neural networks. Allows fully automatic, semi-manual or fully manual specification of networks. For details of the specification methodology see: (i) Crone and Kourentzes (2010) ; and (ii) Kourentzes et al. (2014) .

Visualization and Analysis Tools for Neural Networks

Visualization and analysis tools to aid in the interpretation of neural network models. Functions are available for plotting, quantifying variable importance, conducting a sensitivity analysis, and obtaining a simple list of model weights.

Bayesian Regularization for Feed-Forward Neural Networks

Bayesian regularization for feed-forward neural networks.

Similarity Network Fusion

Similarity Network Fusion takes multiple views of a network and fuses them together to construct an overall status matrix. The input to our algorithm can be feature vectors, pairwise distances, or pairwise similarities. The learned status matrix can then be used for retrieval, clustering, and classification.