Found 7208 packages in 0.01 seconds
Linear Quantile Mixed Models
Functions to fit quantile regression models for hierarchical
data (2-level nested designs) as described in Geraci and
Bottai (2014, Statistics and Computing)
Extended Mixed Models Using Latent Classes and Latent Processes
Estimation of various extensions of the mixed models including latent class mixed models, joint latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017)
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al
Linear Mixed Model Solver
An efficient and flexible system to solve sparse mixed model
equations. Important applications are the use of splines to model spatial or temporal
trends as described in Boer (2023). (
Mixed Effects Cox Models
Fit Cox proportional hazards models containing both fixed and random effects. The random effects can have a general form, of which familial interactions (a "kinship" matrix) is a particular special case. Note that the simplest case of a mixed effects Cox model, i.e. a single random per-group intercept, is also called a "frailty" model. The approach is based on Ripatti and Palmgren, Biometrics 2002.
Mixed Model ANOVA and Statistics for Education
The main functions perform mixed models analysis by least squares or REML by adding the function r() to formulas of lm() and glm(). A collection of text-book statistics for higher education is also included, e.g. modifications of the functions lm(), glm() and associated summaries from the package 'stats'.
Generalized Linear Mixed Model Trees
Recursive partitioning based on (generalized) linear mixed models
(GLMMs) combining lmer()/glmer() from 'lme4' and lmtree()/glmtree() from
'partykit'. The fitting algorithm is described in more detail in Fokkema,
Smits, Zeileis, Hothorn & Kelderman (2018;
Multivariate Normal and t Distributions
Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.
Functional Linear Mixed Models for Irregularly or Sparsely Sampled Data
Estimation of functional linear mixed models for irregularly or sparsely sampled data based on functional principal component analysis.
Generalized Linear Mixed Model Association Tests
Perform association tests using generalized linear mixed models (GLMMs) in genome-wide association studies (GWAS) and sequencing association studies. First, GMMAT fits a GLMM with covariate adjustment and random effects to account for population structure and familial or cryptic relatedness. For GWAS, GMMAT performs score tests for each genetic variant as proposed in Chen et al. (2016)