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Meta-Package for Thematic Mapping with 'tmap'
Attaches a set of packages commonly used for spatial plotting with 'tmap'. It includes 'tmap' and its extensions ('tmap.glyphs', 'tmap.networks', 'tmap.cartogram', 'tmap.mapgl'), as well as supporting spatial data packages ('sf', 'stars', 'terra') and 'cols4all' for exploring color palettes. The collection is designed for thematic mapping workflows and does not include the full set of packages from the R-spatial ecosystem.
Extension to 'tmap' for Creating Cartograms
Provides new layer functions to 'tmap' for creating various types of cartograms. A cartogram is a type of thematic map in which geographic areas are resized or distorted based on a quantitative variable, such as population. The goal is to make the area sizes proportional to the selected variable while preserving geographic positions as much as possible.
Asynchronous Disk-Based Representation of Massive Data
Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.
Extension to 'tmap' for Creating Network Visualizations
Provides functions for visualizing networks with 'tmap'. It supports 'sfnetworks' objects natively but is not limited to them. Useful for adding network layers such as edges and nodes to 'tmap' maps. More features may be added in future versions.
Routines for Performing Empirical Calibration of Observational Study Estimates
Routines for performing empirical calibration of observational
study estimates. By using a set of negative control hypotheses we can
estimate the empirical null distribution of a particular observational
study setup. This empirical null distribution can be used to compute a
calibrated p-value, which reflects the probability of observing an
estimated effect size when the null hypothesis is true taking both random
and systematic error into account. A similar approach can be used to
calibrate confidence intervals, using both negative and positive controls.
For more details, see Schuemie et al. (2013)
Construct Cohort Inclusion and Restriction Criteria Expressions
Wraps the 'CIRCE' (< https://github.com/ohdsi/circe-be>) 'Java' library allowing cohort definition expressions to be edited and converted to 'Markdown' or 'SQL'.
Quantile Binned Plots
Create quantile binned and conditional plots for Exploratory Data Analysis. The package provides several plotting functions that are all based on quantile binning. The plots are created with 'ggplot2' and 'patchwork' and can be further adjusted.
Create and Explore Geographic Zoning Systems
Functions, documentation and example data to help divide
geographic space into discrete polygons (zones).
The package supports new zoning systems that are documented in the
accompanying paper,
"ClockBoard: A zoning system for urban analysis",
by Lovelace et al. (2022)
Standard Dataset Manager for Observational Medical Outcomes Partnership Common Data Model Sample Datasets
Facilitates access to sample datasets from the 'EunomiaDatasets' repository (< https://github.com/ohdsi/EunomiaDatasets>).
Data and Statistical Analyses after Multiple Imputation
Statistical Analyses and Pooling after Multiple Imputation. A large variety
of repeated statistical analysis can be performed and finally pooled. Statistical analysis
that are available are, among others, Levene's test, Odds and Risk Ratios, One sample
proportions, difference between proportions and linear and logistic regression models.
Functions can also be used in combination with the Pipe operator.
More and more statistical analyses and pooling functions will be added over time.
Heymans (2007)