Work with 'GitHub' 'Gists'

Work with 'GitHub' 'gists' from 'R' (e.g., < https://en.wikipedia.org/wiki/GitHub#Gist>, < https://docs.github.com/en/github/writing-on-github/creating-gists/>). A 'gist' is simply one or more files with code/text/images/etc. This package allows the user to create new 'gists', update 'gists' with new files, rename files, delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists', open a 'gist' in your default browser, get embed code for a 'gist', list 'gist' 'commits', and get rate limit information when 'authenticated'. Some requests require authentication and some do not. 'Gists' website: < https://gist.github.com/>.

Generate Citation File Format ('cff') Metadata for R Packages

The Citation File Format version 1.2.0 is a human and machine readable file format which provides citation metadata for software. This package provides core utilities to generate and validate this metadata.

General Purpose 'GraphQL' Client

A 'GraphQL' client, with an R6 interface for initializing a connection to a 'GraphQL' instance, and methods for constructing queries, including fragments and parameterized queries. Queries are checked with the 'libgraphqlparser' C++ parser via the 'graphql' package.

Interface to Species Occurrence Data Sources

A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility ('GBIF'), 'iNaturalist', 'eBird', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes functionality for retrieving species occurrence data, and combining those data.

Database Interface to 'Elasticsearch' and 'OpenSearch'

Connect to 'Elasticsearch' and 'OpenSearch', 'NoSQL' databases built on the 'Java' Virtual Machine and using the 'Apache' 'Lucene' library. Interacts with the 'Elasticsearch' 'HTTP' API' (< https://www.elastic.co/elasticsearch/>) and the 'OpenSearch' 'HTTP' 'API' (< https://opensearch.org/>). Includes functions for setting connection details to 'Elasticsearch' and 'OpenSearch' instances, loading bulk data, searching for documents with both 'HTTP' query variables and 'JSON' based body requests. In addition, 'elastic' provides functions for interacting with APIs for 'indices', documents, nodes, clusters, an interface to the cat API, and more.

Client for the 'Pangaea' Database

Tools to interact with the 'Pangaea' Database (< https://www.pangaea.de>), including functions for searching for data, fetching 'datasets' by 'dataset' 'ID', and working with the 'Pangaea' 'OAI-PMH' service.

Parse Scientific Names

Parse scientific names using 'gnparser' (< https://github.com/gnames/gnparser>), written in Go. 'gnparser' parses scientific names into their component parts; it utilizes a Parsing Expression Grammar specifically for scientific names.

Client for the Open Citations Corpus

Client for the Open Citations Corpus (< http://opencitations.net/>). Includes a set of functions for getting one identifier type from another, as well as getting references and citations for a given identifier.

Parse Darwin Core Files

Parse and create Darwin Core (< http://rs.tdwg.org/dwc/>) Simple and Archives. Functionality includes reading and parsing all the files in a Darwin Core Archive, including the datasets and metadata; read and parse simple Darwin Core files; and validation of Darwin Core Archives.

Visualize Species Occurrence Data

Utilities for visualizing species occurrence data. Includes functions to visualize occurrence data from 'spocc', 'rgbif', and other packages. Mapping options included for base R plots, 'ggplot2', 'leaflet' and 'GitHub' 'gists'.