Yeast-Proteome Secondary-Structure Calculator

An extension for 'NetSurfP-2.0' (Klausen et al. (2019) ) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) ). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.


Reference manual

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1.1.0 by Shashank Kumbhare, 8 days ago

Browse source code at

Authors: Sajad Tasharofi [aut, cph] , Shashank Kumbhare [aut, cre, cph] , Bent Petersen [aut] , Morteza Khaledi [aut] , Amir Shahmoradi [aut]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports spelling, dplyr, readxl, stringr, eulerr, Peptides, utils, svDialogs, tcltk

Suggests rmarkdown, testthat

See at CRAN