A Method for Simulating Data from Perturbed Biological Pathways

Simulate data from a Gaussian graphical model or a Gaussian Bayesian network in two conditions. Given a covariance matrix of a reference condition simulate plausible dysregulations.


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install.packages("simPATHy")

0.2 by Elisa Salviato, a year ago


Browse source code at https://github.com/cran/simPATHy


Authors: Elisa Salviato [aut, cre], Vera Djordjilovic [aut], Chiara Romualdi [aut], Monica Chiogna [aut]


Documentation:   PDF Manual  


AGPL-3 license


Imports mvtnorm, gRbase, graph, igraph, ggm, qpgraph, R.utils, htmlwidgets, shiny, shinydashboard, grDevices, graphics, stats

Suggests knitr, rmarkdown, clipper, topologyGSA


See at CRAN