Visualize the Basic Characteristics of Single-Cell Immune Repertoire

Statistics and visualization of the distribution, diversity and composition of clonotypes, the abundance and length distribution of CDR3, the respective abundance distribution of V and J genes, and the abundance of V-J gene pairs are the basic requirements for single-cell immune group analysis. 'scImmuneGraph' is designed to process data from 10x Genomics Chromium Immune Profiling for T cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows.


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install.packages("scImmuneGraph")

1.1.3 by Fenfei Zhao, a month ago


https://github.com/zff-excellent/scImmuneGraph


Browse source code at https://github.com/cran/scImmuneGraph


Authors: Fenfei Zhao


Documentation:   PDF Manual  


GPL (>= 2) license


Imports RColorBrewer, scales, ggplot2, cowplot, tibble, stringr, tidyverse, readr, tidyr, dplyr, purrr, gtools, plyr, forcats, easypackages, BiocStyle

Suggests rmarkdown, knitr, testthat


See at CRAN