Visualize the Basic Characteristics of Single-Cell Immune Repertoire

Statistics and visualization of the distribution, diversity and composition of clonotypes, the abundance and length distribution of CDR3, the respective abundance distribution of V and J genes, and the abundance of V-J gene pairs are the basic requirements for single-cell immune group analysis. 'scImmuneGraph' is designed to process data from 10x Genomics Chromium Immune Profiling for T cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows.


Reference manual

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1.1.3 by Fenfei Zhao, a month ago

Browse source code at

Authors: Fenfei Zhao

Documentation:   PDF Manual  

GPL (>= 2) license

Imports RColorBrewer, scales, ggplot2, cowplot, tibble, stringr, tidyverse, readr, tidyr, dplyr, purrr, gtools, plyr, forcats, easypackages, BiocStyle

Suggests rmarkdown, knitr, testthat

See at CRAN