Pharmacometric and Pharmacokinetic Toolkit

Pharmacometric tools for common data analytical tasks; closed-form solutions for calculating concentrations at given times after dosing based on compartmental PK models (1-compartment, 2-compartment and 3-compartment, covering infusions, zero- and first-order absorption, and lag times, after single doses and at steady state, per Bertrand & Mentre (2008) < https://www.facm.ucl.ac.be/cooperation/Vietnam/WBI-Vietnam-October-2011/Modelling/Monolix32_PKPD_library.pdf>); parametric simulation from NONMEM-generated parameter estimates and other output; and parsing, tabulating and plotting results generated by Perl-speaks-NONMEM (PsN).


pmxTools

Pharmacometric Tools for Modeling & Simulation

Build Status contributions welcome

Developed by Justin Wilkins, Bill Denney and Rik Schoemaker, with contributions from a host of others.

Pharmacometric tools for common data analytical tasks; closed-form solutions for calculating concentrations at given times after dosing based on compartmental PK models (1-compartment, 2-compartment and 3-compartment, covering infusions, zero- and first-order absorption, and lag times, after single doses and at steady state, per Bertrand & Mentre (2008) https://www.facm.ucl.ac.be/cooperation/Vietnam/WBI-Vietnam-October-2011/Modelling/Monolix32_PKPD_library.pdf); parametric simulation from NONMEM-generated parameter estimates and other output; and parsing, tabulating and plotting results generated by Perl-speaks-NONMEM (PsN).

To install:

devtools::install_github("kestrel99/pmxTools")

or download directly from CRAN.

Reference manual

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install.packages("pmxTools")

1.5 by Justin Wilkins, a year ago


https://github.com/kestrel99/pmxTools, https://kestrel99.github.io/pmxTools/


Report a bug at https://github.com/kestrel99/pmxTools/issues


Browse source code at https://github.com/cran/pmxTools


Authors: Justin Wilkins [aut, cre] (ORCID: , Bill Denney [aut] , Rik Schoemaker [aut] , Satyaprakash Nayak [ctb] , Leonid Gibiansky [ctb] , Andrew Hooker [ctb] , E. Niclas Jonsson [ctb] , Mats O. Karlsson [ctb] , John Johnson [ctb]


Documentation:   PDF Manual  


GPL-2 license


Imports ggplot2, chron, xml2, dplyr, tibble, ggdist, scales, MASS, stringr, PKNCA, magrittr, data.tree

Depends on patchwork

Suggests testthat, vdiffr, knitr, rmarkdown


Suggested by PKNCA, mrgsolve, rxode2.


See at CRAN