Metaproteomics Post-Processing Analysis

Set of tools for descriptive analysis of metaproteomics data generated from high-throughput mass spectrometry instruments. These tools allow to cluster peptides and proteins abundance, expressed as spectral counts, and to manipulate them in groups of metaproteins. This information can be represented using multiple visualization functions to portray the global metaproteome landscape and to differentiate samples or conditions, in terms of abundance of metaproteins, taxonomic levels and/or functional annotation. The provided tools allow to implement flexible analytical pipelines that can be easily applied to studies interested in metaproteomics analysis.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("metaprotr")

1.2.2 by Aaron Millan-Oropeza, 8 months ago


https://forgemia.inra.fr/pappso/metaprotr


Browse source code at https://github.com/cran/metaprotr


Authors: Aaron Millan-Oropeza [aut, cre] , Catherine Juste [aut, ctb] , Ariane Bassignani [aut, ctb] , CĂ©line Henry [aut, ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports ade4, dendextend, dplyr, ggforce, ggrepel, reshape2, stringr, tidyverse


See at CRAN