Tools for HLA Data

A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database < https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' < http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.


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Reference manual

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install.packages("hlaR")

0.1.0 by Joan Zhang, 4 months ago


Browse source code at https://github.com/cran/hlaR


Authors: Joan Zhang [aut, cre] , Aileen Johnson [aut] , Christian P Larsen [cph, aut]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports devtools, usethis, tidyverse, dplyr, reshape2, schoolmath, tibble, stringr, purrr, tidyr, utils, readr, here, readxlsb

Suggests knitr, rmarkdown


See at CRAN