Extract and Visualize Motif Information from MEME Software

Extract and visualize motif information from XML file from MEME software. In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread and usually assumed to be related to specifical biological functions. There exist many software was used to discover motif sequences from a set of nucleotide or amino acid sequences. MEME is almost the most used software to detect motif. It's difficult for biologists to extract and visualize the location of a motif on sequences from the results from MEME software.


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install.packages("ggmotif")

0.1.1 by Xiang LI, a month ago


Browse source code at https://github.com/cran/ggmotif


Authors: Xiang LI


Documentation:   PDF Manual  


Artistic-2.0 license


Imports tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree, ape, aplot


See at CRAN