Extract and Visualize Motif Information from MEME Software

Extract and visualize motif information from XML file from MEME software. In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread and usually assumed to be related to specifical biological functions. There exist many software was used to discover motif sequences from a set of nucleotide or amino acid sequences. MEME is almost the most used software to detect motif. It's difficult for biologists to extract and visualize the location of a motif on sequences from the results from MEME software.


Reference manual

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0.1.1 by Xiang LI, a month ago

Browse source code at https://github.com/cran/ggmotif

Authors: Xiang LI

Documentation:   PDF Manual  

Artistic-2.0 license

Imports tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree, ape, aplot

See at CRAN