Debris-Containing Droplet Identification using EM

Identification of debris-containing droplets from a droplet-based single cell/nucleus RNA-seq. 'diem' uses the expression profile of background RNA droplets, followed by expectation maximization (EM), to assign candidates as debris or nuclei. See Alvarez M, Rahmani E, et al (2019) for details.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("diem")

1.0 by Marcus Alvarez, 20 days ago


https://www.biorxiv.org/content/10.1101/786285v2


Report a bug at https://github.com/marcalva/diem/issues


Browse source code at https://github.com/cran/diem


Authors: Marcus Alvarez [aut, cre] , Elior Rahmani [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports ggplot2, Matrix, scales, dbscan, igraph, utils, stats

Depends on methods

Suggests Seurat, testthat, knitr, rmarkdown

Linking to Rcpp, RcppEigen


See at CRAN