Debris-Containing Droplet Identification using EM

Identification of debris-containing droplets from a droplet-based single cell/nucleus RNA-seq. 'diem' uses the expression profile of background RNA droplets, followed by expectation maximization (EM), to assign candidates as debris or nuclei. See Alvarez M, Rahmani E, et al (2019) for details.


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1.0 by Marcus Alvarez, a year ago

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Authors: Marcus Alvarez [aut, cre] , Elior Rahmani [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports ggplot2, Matrix, scales, dbscan, igraph, utils, stats

Depends on methods

Suggests Seurat, testthat, knitr, rmarkdown

Linking to Rcpp, RcppEigen

See at CRAN