A Dashboard to Visualize Scientific Workflows in 'Cromwell'

A dashboard supports the usage of 'cromwell'. 'Cromwell' is a scientific workflow engine for command line users. This package utilizes 'cromwell' REST APIs and provides these convenient functions: timing diagrams for running workflows, 'cromwell' engine status, a tabular workflow list. For more information about 'cromwell', visit < http://cromwell.readthedocs.io>.


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A Dashboard to Visualize Scientific Workflows in Cromwell

  1. Start cromwell server in shell

java -jar cromwell-33.1.jar server

  1. Start cromwellDashboard in R

runCromwellDashboard("192.168.54.28:8123")

Installation

Install the latest stable version

install.packages("cromwellDashboard")

Install the development version (devtools package is required):

devtools::install_github("zhanxw/cromwellDashboard")

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Reference manual

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install.packages("cromwellDashboard")

0.5.1 by Xiaowei Zhan, 8 months ago


Browse source code at https://github.com/cran/cromwellDashboard


Authors: Xiaowei Zhan


Documentation:   PDF Manual  


GPL-3 license


Imports shiny, shinydashboard, stringr, httr, dplyr, DT


See at CRAN