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cinaR

A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data.

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install.packages("cinaR")

0.2.0 by Onur Karakaslar, 2 months ago

https://github.com/eonurk/cinaR/

Report a bug at https://github.com/eonurk/cinaR/issues/

Browse source code at https://github.com/cran/cinaR

Authors: Onur Karakaslar [aut, cre] , Duygu Ucar [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports ChIPseeker, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, ggplot2, ggrepel, grDevices, limma, utils, pheatmap, preprocessCore, RColorBrewer, sva, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, writexl

Suggests biomaRt, knitr, rmarkdown

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