An Interface for GenBank/GenPept Flat Files

Parse GenBank/GenPept records < https://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html> into native R objects to easily access and manipulate the sequence and annotation information.


News

biofiles 1.0.0

  • Added a NEWS.md file to track changes to the package.

Reference manual

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install.packages("biofiles")

1.0.0 by Gerhard Schöfl, 2 years ago


https://github.com/gschofl/biofiles


Report a bug at https://github.com/gschofl/biofiles/issues


Browse source code at https://github.com/cran/biofiles


Authors: Gerhard Schöfl [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports assertthat, BiocGenerics, Biostrings, foreach, GenomeInfoDb, GenomicRanges, IRanges, iterators, methods, parallel, RCurl, reutils, stats, S4Vectors, XVector

Depends on Rcpp

Suggests doParallel, testthat, BiocStyle, knitr, covr

Linking to Rcpp


See at CRAN