Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Tools for fitting and simulating multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using Bayesian reversible-jump methods.


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install.packages("bayou")

2.1.1 by Josef C. Uyeda, 3 months ago


Browse source code at https://github.com/cran/bayou


Authors: Josef C. Uyeda , Jon Eastman and Luke Harmon


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL (>= 2) license


Imports Rcpp, MASS, mnormt, fitdistrplus, denstrip, assertthat, foreach, Matrix, graphics, grDevices, stats

Depends on ape, geiger, phytools, coda

Suggests doParallel

Linking to Rcpp, RcppArmadillo


See at CRAN