Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Tools for fitting and simulating multi-optima Ornstein-Uhlenbeck models to phylogenetic comparative data using Bayesian reversible-jump methods.


Reference manual

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2.1.1 by Josef C. Uyeda, a year ago

Browse source code at

Authors: Josef C. Uyeda , Jon Eastman and Luke Harmon

Documentation:   PDF Manual  

Task views: Phylogenetics, Especially Comparative Methods

GPL (>= 2) license

Imports Rcpp, MASS, mnormt, fitdistrplus, denstrip, assertthat, foreach, Matrix, graphics, grDevices, stats

Depends on ape, geiger, phytools, coda

Suggests doParallel

Linking to Rcpp, RcppArmadillo

See at CRAN