Automatic Phylogenetic Tree Generator

Generates phylogenetic trees and distance matrices ('brranching', < https://CRAN.R-project.org/package=brranching>) from a list of species name or from a taxon down to whatever lower taxon ('taxize', < https://github.com/ropensci/taxize>). It can do so based on two reference super trees: mammals (Bininda-Emonds et al., 2007; ) and angiosperms (Zanne et al., 2014; ).


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Reference manual

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install.packages("aptg")

0.1.1 by Christophe Benjamin, 8 months ago


Browse source code at https://github.com/cran/aptg


Authors: Christophe Benjamin


Documentation:   PDF Manual  


MIT + file LICENSE license


Depends on ape, brranching, phytools, taxize, xml2

Suggests paco, vegan, knitr, rmarkdown, qpdf


See at CRAN