Analysis of Large-Scale Toxico-Genomic Data

Contains a set of functions to perform large-scale analysis of toxico-genomic data. A member of the BHK lab's Gx suite of software, this package provides a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxico-genomic data. This package is in early release, and more features will be added over the next few months.


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Reference manual

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install.packages("ToxicoGx")

0.1.1 by Benjamin Haibe-Kains, 5 months ago


Browse source code at https://github.com/cran/ToxicoGx


Authors: Sisira Nair [aut] , Esther Yoo [aut] , Christopher Eeles [aut] , Amy Tang [aut] , Nehme El-Hachem [aut] , Petr Smirnov [aut] , Benjamin Haibe-Kains [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports SummarizedExperiment, Biobase, RColorBrewer, ggplot2, data.table, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, scales

Depends on CoreGx

Suggests testthat, rmarkdown, knitr, tinytex, knitcitations, devtools, PharmacoGx, xtable


See at CRAN