Analysis of Large-Scale Toxico-Genomic Data

Contains a set of functions to perform large-scale analysis of toxico-genomic data. A member of the BHK lab's Gx suite of software, this package provides a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxico-genomic data. This package is in early release, and more features will be added over the next few months.


Reference manual

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0.1.1 by Benjamin Haibe-Kains, 5 months ago

Browse source code at

Authors: Sisira Nair [aut] , Esther Yoo [aut] , Christopher Eeles [aut] , Amy Tang [aut] , Nehme El-Hachem [aut] , Petr Smirnov [aut] , Benjamin Haibe-Kains [aut, cre]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports SummarizedExperiment, Biobase, RColorBrewer, ggplot2, data.table, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, scales

Depends on CoreGx

Suggests testthat, rmarkdown, knitr, tinytex, knitcitations, devtools, PharmacoGx, xtable

See at CRAN