Splicing Efficiency Analysis and Annotation

The aim of 'SEAA' is to provide convenient and rapid splicing efficiency calculation and splicing sites annotation function using next generation sequencing data. Aligned files and a processed splicing sites annotation file are needed. The task can be finished in several minutes using multi-core computing with the assistance of 'Rsubread'. Plots of splicing status type and Cumulative Distribution Function (CDF) and annotated valid splicing efficiency can be exported.


Reference manual

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0.9.6 by Zixiang Wang, a month ago

Browse source code at https://github.com/cran/SEAA

Authors: Zixiang Wang [aut, cre] , Zhaojian Liu [aut]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports clusterProfiler, ggforce, ggplot2, ggpubr, ggrepel, grDevices, gridExtra, org.Hs.eg.db, org.Mm.eg.db, reshape2, Rsubread, stats, tidyr, utils

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See at CRAN