Calculations and Visualisations Related to Geometric Morphometrics

A toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks and semi-automated surface landmark placement.


Morpho provides a rich toolset for Geometric Morphometrics and mesh processing in R. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks, im- and export of a variety of triangular surface mesh files.

Within R:

install.packages("Morpho")
  1. Install devtools from within R (Ubuntu/Debian users will have to install libcurl4-gnutls-dev beforehand):

     install.packages("devtools")
    

    Make sure to have the latest versions of Rcpp and RcppArmadillo installed!!

  1. Install build environment
    • Windows: Install latest version of Rtools During installation of Rtools make sure to install the toolchain, and to select "Edit the system path" (and confirming the installers suggestions).
    • OSX: Install XCODE

Run the following command in R:

require(devtools)
install_github("zarquon42b/Morpho", local=FALSE)

News

Reference manual

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install.packages("Morpho")

2.7 by Stefan Schlager, 4 months ago


https://github.com/zarquon42b/Morpho


Report a bug at https://github.com/zarquon42b/Morpho/issues


Browse source code at https://github.com/cran/Morpho


Authors: Stefan Schlager [aut, cre, cph] , Gregory Jefferis [ctb] , Dryden Ian [cph]


Documentation:   PDF Manual  


Task views: Medical Image Analysis


GPL-2 license


Imports Rvcg, rgl, foreach, Matrix, MASS, parallel, doParallel, colorRamps, Rcpp, graphics, grDevices, methods, stats, utils

Suggests car, lattice, shapes, testthat

Linking to Rcpp, RcppArmadillo


Imported by Arothron, patternize.

Suggested by Rvcg.


See at CRAN