Omics Data Analysis

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).


Reference manual

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0.5 by Matthias Kohl, 8 months ago

Browse source code at

Authors: Matthias Kohl [aut, cre]

Documentation:   PDF Manual  

LGPL-3 license

Imports stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma

Suggests knitr, rmarkdown

See at CRAN