Indices and Graphics for Assess Seed Germination Process

A collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) .

GerminaR

GerminaR is a platform base in open source R package to calculate and graphic the main germination indices. GerminaR include a web application called “GerminQuant for R” for interactive analysis.

Installation

You can install the released version of GerminaR from CRAN with:

install.packages("GerminaR")

And the development version from GitHub with:

if (!require("remotes"))
  install.packages("remotes")
remotes::install_github("Flavjack/GerminaR")

GerminaQuant app

GerminaR::GerminaQuant()

If is the first time running the app you should install the app dependencies, including the following argument:

GerminaR::GerminaQuant(dependencies = TRUE)

After install the package and the app dependencies you can access to the app through the Addins list in Rstudio, or in the following link in the internet https://inkaverse.shinyapps.io/germinaquant/

Citation

Lozano-Isla, Flavio; Benites-Alfaro, Omar Eduardo; Pompelli, Marcelo Francisco (2019). GerminaR: An R package for germination analysis with the interactive web application “GerminaQuant for R.” Ecological Research, 34(2), 339–346. https://doi.org/10.1111/1440-1703.1275