Differential Pattern Analysis via Linear Modeling

Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). .


Reference manual

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1.1 by Ryan C. Sartor, a year ago

Browse source code at https://github.com/cran/DiPALM

Authors: Ryan C. Sartor <[email protected]> , Kathleen Greenham <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports limma, WGCNA, ggplot2

Suggests edgeR

See at CRAN