Degree-Day Phenology Calculator ('shiny' Application)

Provides a 'shiny' application to compute daily and cumulative degree-days from minimum and maximum temperatures using average, single triangle, and single sine methods, with optional upper temperature thresholds. The application maps cumulative thermal accumulation to user-defined developmental stage thresholds and supports exporting tabular and graphical outputs. The degree-day approach follows assumptions described by Higley et al. (1986) .


DegreeDayCalc

DegreeDayCalc is an R package that provides an interactive Shiny application for calculating insect phenology using degree-day (thermal time) models.
It allows users to explore developmental progression across life stages (egg, larval/nymphal instars, pupa, adult, and preoviposition) using multiple degree-day calculation methods.

The package is designed for entomologists, ecologists, agronomists, and pest management researchers interested in modeling temperature-driven development.


Features

  • Interactive Shiny application
  • Multiple degree-day calculation methods:
    • Average
    • Average (cut)
    • Triangular
    • Triangular with upper threshold
    • Sine
    • Sine with upper threshold
  • Flexible life-stage definitions:
    • Egg
    • Larva 1-6 or Nymph 1-6 (user selectable)
    • Pupa
    • Adult
    • Preoviposition
  • Upload daily temperature data (CSV or Excel)
  • Automatic assignment of developmental stages
  • Visualization of cumulative degree-days and stage transitions
  • Downloadable results table (CSV) and figure (PNG)

Installation

install.packages("DegreeDayCalc")

Reference manual

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install.packages("DegreeDayCalc")

0.1.1 by Victor Manuel Almaraz Valle, 3 months ago


Browse source code at https://github.com/cran/DegreeDayCalc


Authors: Victor Manuel Almaraz Valle [aut, cre] (ORCID: , J. Concepción Rodríguez Maciel [aut] , Gustavo Ramírez Valverde [aut] , Jaime Alfredo Urzua Gutierrez [aut] , Manuel Alejandro Tejeda Reyes [aut]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports shiny, DT, ggplot2, readxl

Suggests testthat


See at CRAN