A Complete Deconvolution Method using Sequencing Data

Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) .


Reference manual

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1.0.8 by Kai Kang, a year ago

https://github.com/kkang7/CDSeq_R_Package, https://doi.org/10.1371/journal.pcbi.1007510

Report a bug at https://github.com/kkang7/CDSeq_R_Package/issues

Browse source code at https://github.com/cran/CDSeq

Authors: Kai Kang [aut, cre, cph] , Caizhi Huang [aut] , Qian Meng [ctb] , Igor Shats [ctb] , Melissa Li [ctb] , David Umbach [ctb] , Leping Li [aut, cph] , Yuanyuan Li [ctb] , Xiaoling Li [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports Rcpp, MASS, foreach, doParallel, dirmult, RcppThread, iterators, parallel, qlcMatrix, gplots, grDevices, clue, Biobase, Seurat, ggplot2, magrittr, dplyr, rlang, Matrix, matrixStats, ggpubr

Suggests knitr, rmarkdown, testthat

Linking to Rcpp, RcppArmadillo

See at CRAN