A Complete Deconvolution Method using Sequencing Data

Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) .


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Reference manual

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install.packages("CDSeq")

1.0.8 by Kai Kang, 7 months ago


https://github.com/kkang7/CDSeq_R_Package, https://doi.org/10.1371/journal.pcbi.1007510


Report a bug at https://github.com/kkang7/CDSeq_R_Package/issues


Browse source code at https://github.com/cran/CDSeq


Authors: Kai Kang [aut, cre, cph] , Caizhi Huang [aut] , Qian Meng [ctb] , Igor Shats [ctb] , Melissa Li [ctb] , David Umbach [ctb] , Leping Li [aut, cph] , Yuanyuan Li [ctb] , Xiaoling Li [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, MASS, foreach, doParallel, dirmult, RcppThread, iterators, parallel, qlcMatrix, gplots, grDevices, clue, Biobase, Seurat, ggplot2, magrittr, dplyr, rlang, Matrix, matrixStats, ggpubr

Suggests knitr, rmarkdown, testthat

Linking to Rcpp, RcppArmadillo


See at CRAN