Examples: visualization, C++, networks, data cleaning, html widgets, ropensci.

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INetTool — by Valeria Policastro, 6 months ago

Integration Network

It constructs a Consensus Network which identifies the general information of all the layers and Specific Networks for each layer with the information present only in that layer and not in all the others.The method is described in Policastro et al. (2024) "INet for network integration" .

NetCluster — by Sean J Westwood, 13 years ago

Clustering for networks

Facilitates network clustering and evaluation of cluster configurations.

NetExplorer — by Sosa Sebastian, 4 years ago

Network Explorer

Social network analysis has become an essential tool in the study of complex systems. 'NetExplorer' allows to visualize and explore complex systems. It is based on 'd3js' library that brings 1) Graphical user interface; 2) Circular, linear, multilayer and force Layout; 3) Network live exploration and 4) SVG exportation.

robin — by Valeria Policastro, a year ago

ROBustness in Network

Assesses the robustness of the community structure of a network found by one or more community detection algorithm to give indications about their reliability. It detects if the community structure found by a set of algorithms is statistically significant and compares the different selected detection algorithms on the same network. robin helps to choose among different community detection algorithms the one that better fits the network of interest. Reference in Policastro V., Righelli D., Carissimo A., Cutillo L., De Feis I. (2021) < https://journal.r-project.org/archive/2021/RJ-2021-040/index.html>.

geonetwork — by Facundo Muñoz, 5 months ago

Geographic Networks

Provides classes and methods for handling networks or graphs whose nodes are geographical (i.e. locations in the globe). The functionality includes the creation of objects of class geonetwork as a graph with node coordinates, the computation of network measures, the support of spatial operations (projection to different Coordinate Reference Systems, handling of bounding boxes, etc.) and the plotting of the geonetwork object combined with supplementary cartography for spatial representation.

aniSNA — by Prabhleen Kaur, 2 years ago

Statistical Network Analysis of Animal Social Networks

Obtain network structures from animal GPS telemetry observations and statistically analyse them to assess their adequacy for social network analysis. Methods include pre-network data permutations, bootstrapping techniques to obtain confidence intervals for global and node-level network metrics, and correlation and regression analysis of the local network metrics.

goldfish — by Alvaro Uzaheta, 8 months ago

Statistical Network Models for Dynamic Network Data

Tools for fitting statistical network models to dynamic network data. Can be used for fitting both dynamic network actor models ('DyNAMs') and relational event models ('REMs'). Stadtfeld, Hollway, and Block (2017a) , Stadtfeld, Hollway, and Block (2017b) , Stadtfeld and Block (2017) , Hoffman et al. (2020) .

parmigene — by Gabriele Sales, a year ago

Parallel Mutual Information Estimation for Gene Network Reconstruction

Parallel estimation of the mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks (Sales et al, 2011 ).

netstat — by Steve Condylios, 3 years ago

Retrieve Network Statistics Including Available TCP Ports

R interface for the 'netstat' command line utility used to retrieve and parse commonly used network statistics, including available and in-use transmission control protocol (TCP) ports. Primers offering technical background information on the 'netstat' command line utility are available in the "Linux System Administrator's Manual" by Michael Kerrisk (2014) < https://man7.org/linux/man-pages/man8/netstat.8.html>, and on the Microsoft website (2017) < https://docs.microsoft.com/en-us/windows-server/administration/windows-commands/netstat>.

ckanr — by Francisco Alves, 3 years ago

Client for the Comprehensive Knowledge Archive Network ('CKAN') API

Client for 'CKAN' API (< https://ckan.org/>). Includes interface to 'CKAN' 'APIs' for search, list, show for packages, organizations, and resources. In addition, provides an interface to the 'datastore' API.