Fetch 'Phylogenies' from Many Sources

Includes methods for fetching 'phylogenies' from a variety of sources, including the 'Phylomatic' web service (< http://phylodiversity.net/phylomatic/>), and 'Phylocom' (< https://github.com/phylocom/phylocom/>).

'ZooBank' API Client

Interface to the 'ZooBank' API (< http://zoobank.org/Api>) client. 'ZooBank' (< http://zoobank.org/>) is the official registry of zoological nomenclature. Methods are provided for using each of the API endpoints, including for querying by author, querying for publications, get statistics on 'ZooBank' activity, and more.

Interface to Bold Systems API

A programmatic interface to the Web Service methods provided by Bold Systems (< http://www.boldsystems.org/>) for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

Dynamic Documents for R

Convert R Markdown documents into a variety of formats.

Interface to the 'USGS' 'BISON' API

Interface to the 'USGS' 'BISON' (< https://bison.usgs.gov/>) API, a 'database' for species occurrence data. Data comes from species in the United States from participating data providers. You can get data via 'taxonomic' and location based queries. A simple function is provided to help visualize data.

Fetch Sections of XML Scholarly Articles

Get chunks of XML scholarly articles without having to know how to work with XML. Custom mappers for each publisher and for each article section pull out the information you want. Works with outputs from package 'fulltext', 'xml2' package documents, and file paths to XML documents.

'NatureServe' Interface

Interface to 'NatureServe' (< https://www.natureserve.org/>). Includes methods to get data, image metadata, search taxonomic names, and make maps.

General Purpose R Interface to 'Solr'

Provides a set of functions for querying and parsing data from 'Solr' (< https://solr.apache.org/>) 'endpoints' (local and remote), including search, 'faceting', 'highlighting', 'stats', and 'more like this'. In addition, some functionality is included for creating, deleting, and updating documents in a 'Solr' 'database'.

Directory of Open Access Journals Client

Client for the Directory of Open Access Journals ('DOAJ') (< https://doaj.org/>). API documentation at < https://doaj.org/api/v1/docs>. Methods included for working with all 'DOAJ' API routes: fetch article information by identifier, search for articles, fetch journal information by identifier, and search for journals.

Interface to the 'Orcid.org' API

Client for the 'Orcid.org' API (< https://orcid.org/>). Functions included for searching for people, searching by 'DOI', and searching by 'Orcid' 'ID'.