Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples

A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.


Reference manual

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1.6 by Meredith Ray, 3 years ago

Browse source code at

Authors: Meredith Ray , Xin Tong , Hongmei Zhang

Documentation:   PDF Manual  

Artistic-2.0 license

Imports graphics, stats, corpcor, simsalapar, MASS

Depends on matrixStats, sva, limma

Suggests mvtnorm

See at CRAN