A Tidy Implementation of 'ESTIMATE'

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) .


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Reference manual

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install.packages("tidyestimate")

1.0.4 by Kai Aragaki, a month ago


https://github.com/KaiAragaki/tidyestimate


Report a bug at https://github.com/KaiAragaki/tidyestimate/issues


Browse source code at https://github.com/cran/tidyestimate


Authors: Kai Aragaki [aut, cre] , Paul Roebuck [cph] (Copyright holder of ESTIMATE package) , Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm) , Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm) , Hoon Kim [aut] (Author of original ESTIMATE algorithm) , Roel Verhaak [aut] (Author of original ESTIMATE algorithm)


Documentation:   PDF Manual  


GPL (>= 2) license


Imports utils, grDevices, graphics, glue, dplyr, stats, rlang, ggrepel, ggplot2

Suggests rmarkdown, knitr


See at CRAN