socialmixr
Social Mixing Matrices for Infectious Disease Modelling
Provides methods for sampling contact matrices from diary data for use in infectious disease modelling, as discussed in Mossong et al. (2008)
socialmixr is an R package to derive social mixing matrices from survey data.
Installation
The current development version can be installed using the devtools package
devtools::install_github("sbfnk/socialmixr")Documentation
For information on how to use the socialmixr package, see the vignette.
News
socialmixr 0.1.3
- improved handling of DOIs
- fixed usage of weights
- more consistency checks and tests
- performance improvements when weighting
- 'pop_age' can now be called by the user
socialmixr 0.1.2
- improved downloading form Zenodo; only a single download is used now
- improved handling of country names
- fixed bugs in the "filter" option
- POLYMOD data set updated to latest v1.1
- allow user to choose how ages are estimated from age ranges
socialmixr 0.1.1
- fix: dependency on R >= 3.4.0
- updated reference handling if a survey is not pulled from Zenodo
- the 'survey' function can now be used to create a 'survey' object from data frames
- a few small patches and fixes
socialmixr 0.1.0
- initial release