Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or 'greta' - While Adjusting Burn-in and Thinning Parameters

The function runMCMC_btadjust() returns a mcmc.list object which is the output of a Markov Chain Monte Carlo obtained - from either 'JAGS', 'nimble' or 'greta' - after adjusting burn-in and thinning parameters to meet pre-specified criteria in terms of convergence & effective sample size. Used with 'nimble', runMCMC_btadjust() allows extra calculations (e.g. information criteria for model comparison and goodness-of-fit p-values for model diagnosis).


Reference manual

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install.packages("runMCMCbtadjust")

1.1.3 by Frédéric Gosselin, 7 months ago


Browse source code at https://github.com/cran/runMCMCbtadjust


Authors: Frédéric Gosselin [cre, aut] (ORCID: , institution: INRAE) , Institut national de recherche pour l'agriculture , l'alimentation et l'environnement [cph] (INRAE)


Documentation:   PDF Manual  


CECILL-2.1 license


Imports coda

Suggests nimble, rjags, runjags, greta, R6, tensorflow, ggmcmc, rstan, knitr, markdown, testthat, nimbleAPT, nimbleHMC, parallel, Hmisc, moments


See at CRAN