Calculate Population Stratification

Implementation of ADMIXTURE for individual ancestry inference in R. Specifically, ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets, see < https://www.genetics.ucla.edu/software/admixture/>. Users can use 'radmixture' to calculate ancestry components with different public datasets. It is very convenient and fast for personal genotype data. For more details, see < https://github.com/wegene-llc/radmixture/blob/master/README.md>.


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Reference manual

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install.packages("radmixture")

0.0.1 by Beilei Bian, 3 years ago


https://github.com/wegene-llc/radmixture


Report a bug at https://github.com/wegene-llc/radmixture/issues


Browse source code at https://github.com/cran/radmixture


Authors: Beilei Bian [aut, cre] , Dajun Luo [ctb] (R's C API) , Gang Chen [ctb] , Senwei Tang [ctb] , WeGene [cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports quadprog, plyr, magrittr, MCMCpack

Suggests rmarkdown, knitr, testthat


See at CRAN