Predict Transmembrane Protein Topology

Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (< https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), ), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("pureseqtmr")

1.2 by Richèl J.C. Bilderbeek, 12 days ago


https://github.com/richelbilderbeek/pureseqtmr


Report a bug at https://github.com/richelbilderbeek/pureseqtmr


Browse source code at https://github.com/cran/pureseqtmr


Authors: Richèl J.C. Bilderbeek [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports ggplot2, plyr, rappdirs, stringr, tibble

Suggests testthat, knitr, rmarkdown

System requirements: PureseqTM (https://github.com/PureseqTM/pureseqTM_package)


See at CRAN