Predict Transmembrane Protein Topology

Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), ), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.


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1.2 by Richèl J.C. Bilderbeek, a year ago

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Authors: Richèl J.C. Bilderbeek [aut, cre]

Documentation:   PDF Manual  

GPL-3 license

Imports ggplot2, plyr, rappdirs, stringr, tibble

Suggests testthat, knitr, rmarkdown

System requirements: PureseqTM (

See at CRAN