Phylogenetic Tools for Eco-Phylogenetics

A collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

phylotools is an R package, to install it, please use the following command in R:



If you haven't had devtools installed, please install it by typing "install.packages("devtools")" in R console.

Please feel free to send an email to the package maintainer Dr. Jinlong Zhang if you have any question or comments about this package.


Reference manual

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0.2.2 by Jinlong Zhang, 4 years ago

Browse source code at

Authors: Jinlong Zhang [aut, cre] , Nancai Pei [ctb] , Xiangcheng Mi [ctb]

Documentation:   PDF Manual  

Task views: Phylogenetics, Especially Comparative Methods

GPL-2 license

Depends on ape

Suggests vegan

See at CRAN